FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004832298

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004832298
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15861823
Sequences flagged as poor quality0
Sequence length65-126
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGATCT349250.09.0556120
GTGTAGA468350.08.687649120
AGAGTGT552600.08.318806120
GAGTGTA504500.08.303044120
AGTGTAG469200.08.262617120
AAGAGTG615600.07.9841437120
AGATCTC367250.07.7947044120
GTAGATC463750.07.6997414120
ATCTCGG346950.07.645369120
TGTAGAT490650.07.6200767120
TGGTCGC210450.07.4712873120
TCGGTGG294600.07.19093120
GTGGTCG234150.07.1764054120
TCTCGGT308200.07.1462226120
GATCTCG396300.07.0416102120
CTCGGTG330850.06.9834924120
GGTGGTC263200.06.954358120
AAAGAGT689100.06.9174805118-119
GAAAGAG812200.06.8125706120
TAGGGAA843950.06.789268118-119
Produced by FastQC (version 0.11.5)