FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004832327

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004832327
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11488438
Sequences flagged as poor quality0
Sequence length50-126
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC138650.074.60975120
GAGCACA215000.045.789745120
AGAGCAC279300.036.23962118-119
AAGAGCA425800.023.835253120
GAAGAGC456200.022.259752116-117
GGAAGAG561400.017.977869118-119
CGGAAGA648550.015.724902114-115
TCGGAAG646350.015.548772116-117
ATCGGAA769650.013.443391112-113
GATCGGA772500.013.154944114-115
AGATCGG848250.012.179883110-111
ACACGTC45050.011.738574120
TAGATCG184350.010.992766118-119
CTAGATC45600.010.713492118-119
CACACGT41150.010.201177118-119
CACGTCT44350.010.1994915118-119
GAGATCG337350.09.321803110-111
TTAGATC71350.09.282075116-117
AAGATCG287200.09.198698112-113
CAGATCG304800.08.798147112-113
Produced by FastQC (version 0.11.5)