FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004832333

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004832333
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14347581
Sequences flagged as poor quality0
Sequence length50-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC176150.079.530655120
GAGCACA288200.049.392994120
AGAGCAC389600.036.85367120
AAGAGCA587600.024.860275118-119
GAAGAGC673700.021.26679118-119
GGAAGAG815200.018.804636120
CGGAAGA965950.015.820338120
TCGGAAG991950.015.347087118-119
ATCGGAA1148000.013.254968118-119
GATCGGA1183000.012.955999116-117
AGATCGG1311050.011.687349120
TAGATCG325750.011.213574120
CACGTCT53000.010.454335120
CACACGT45950.010.346356118-119
CTAGATC76450.010.110884118-119
TTAGATC116050.09.607947118-119
GAGATCG522700.09.161434114-115
CAGATCG472600.08.54036114-115
ACACGTC56200.08.520184120
AAGATCG399550.08.51746118-119
Produced by FastQC (version 0.11.5)