FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004832345

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004832345
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12155619
Sequences flagged as poor quality0
Sequence length50-126
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC115350.061.331417120
GAGCACA172650.042.357227120
AGAGCAC228450.031.298147118-119
AAGAGCA362550.021.397196120
GAAGAGC404300.018.534218120
GGAAGAG486150.015.877599120
TCGGAAG576250.014.4908120
CGGAAGA584350.013.23142120
ATCGGAA678250.012.463565120
GATCGGA682650.012.305984118-119
AGATCGG771950.011.126005120
TAGATCG191950.010.53998120
CTAGATC46950.09.9975195118-119
TTAGATC72300.09.9810915120
CCTAGAT18250.08.473184120
GAGATCG351000.08.444015120
CACACGT37000.07.8362637120
AAGATCG278650.07.684189116-117
CACGTCT40950.06.9230433120
CAGATCG292800.06.9065704116-117
Produced by FastQC (version 0.11.5)