FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004832346

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004832346
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12789694
Sequences flagged as poor quality0
Sequence length53-126
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCGGG28150.017.481726120
AAAAAAA1852850.016.285603120
GGTCCGC30800.011.88244151
CGTATCA967000.011.189692120
GGTGTGT36800.011.0863271
GGTACCG38500.010.9084711
GGTCCTC23150.010.8849111
TCATTAA697150.010.83798120
GCGTCGG111400.010.828285120
GGTCCTA11102.1827873E-1110.8101961
TATCATT882600.010.7162075120
GGTCCCT10105.4205884E-1010.6924621
CATTAAA657200.010.684081120
GGGTCTG31750.010.5820761
ATCATTA773500.010.357853120
GGTATGG56550.010.1850981
GTATCAT896700.010.14614120
GGTCCCG18350.010.1356641
CCGTATC1079950.010.1138525120
CGCCGTA1294200.010.006885120
Produced by FastQC (version 0.11.5)