FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004832371

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004832371
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13208749
Sequences flagged as poor quality0
Sequence length50-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC177950.067.275314120
GAGCACA253450.044.911713120
AGAGCAC337900.034.45075118-119
AAGAGCA519700.022.632002120
GAAGAGC568750.021.382208120
GGAAGAG713350.016.762886118-119
TCGGAAG814600.015.244654120
CGGAAGA807000.014.976347118-119
ATCGGAA989050.012.788423120
GATCGGA1000250.012.5716118-119
TAGATCG254300.011.523049120
AGATCGG1093300.011.372131118-119
CACGTCT44350.011.139229120
CACACGT42800.010.593925120
ACACGTC45050.010.515481120
CTAGATC66700.09.656096108-109
AAGATCG497100.08.843498116-117
TTAGATC109450.08.809283114-115
GAGATCG361900.08.318656118-119
GCTAGAT26800.08.17763112-113
Produced by FastQC (version 0.11.5)