FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004832411

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004832411
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12734974
Sequences flagged as poor quality0
Sequence length50-126
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC159000.074.2188120
GAGCACA233850.048.546753120
AGAGCAC315200.036.80918118-119
AAGAGCA482150.024.018002120
GAAGAGC541700.021.535236120
GGAAGAG677200.017.521347118-119
CGGAAGA795900.014.921855114-115
TCGGAAG797700.014.812456116-117
ATCGGAA951650.012.573198116-117
GATCGGA954050.012.526595114-115
CACGTCT65600.011.710747120
AGATCGG1038650.011.482309114-115
ACACGTC69950.010.880797120
TAGATCG255050.010.849681112-113
CACACGT51050.010.729011120
CTAGATC58850.010.273942120
TTAGATC87050.09.356752118-119
ACGTCTG79050.09.133822118-119
CGTCTGA91450.08.867186120
GAGATCG386850.08.816617110-111
Produced by FastQC (version 0.11.5)