FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004832416

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004832416
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13819086
Sequences flagged as poor quality0
Sequence length50-126
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGG75900.09.485482120
TGGTCGC196050.08.66043120
ATCTCGG335600.08.509517120
GATCTCG359800.08.454086120
GTGGTCG213550.08.428331120
GGTGGTC239000.08.359229120
AGATCTC370300.08.100954120
TCGGTGG284700.08.092145120
TAGATCT372500.08.077313118-119
GTGTAGA495050.07.8774233120
GGTCGCC195550.07.76216120
AGTGTAG499600.07.6015334120
CTCGGTG296450.07.5892644120
CGGTGGT280900.07.4754305120
GAGTGTA537550.07.444351120
GTAGATC497250.07.3599515120
TCTCGGT311800.07.3118916118-119
AGAGTGT574400.07.2696705120
CGCCGTA185000.07.13462120
TGTAGAT538900.06.8913193120
Produced by FastQC (version 0.11.5)