FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004832430

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004832430
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13347372
Sequences flagged as poor quality0
Sequence length61-126
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGG101000.09.326172120
TAGATCT620850.08.677903120
GGTGGTC385250.08.5964985120
TCGGTGG454750.08.324953120
TGGTCGC326150.08.277903120
GTGGTCG361150.08.206623120
GATCTCG615150.08.007322120
CGGTGGT437700.07.9501734120
CTCGGTG482450.07.921589120
GTGTAGA797900.07.887732120
ATCTCGG555050.07.8366613120
TCTCGGT506900.07.8117223120
AGATCTC601800.07.6615825118-119
AGTGTAG820900.07.564413120
TGTAGAT808250.07.5046525120
GGTCGCC339850.07.396937120
GAGTGTA879000.07.392048120
AAAAAAA617550.07.276706120
CGCCGTA298650.07.2321124120
AGAGTGT942700.07.1725826120
Produced by FastQC (version 0.11.5)