FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004832439

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004832439
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13842251
Sequences flagged as poor quality0
Sequence length50-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC143750.071.64661120
GAGCACA229350.047.626747120
AGAGCAC309650.034.36374118-119
AAGAGCA490650.022.985601120
GAAGAGC540150.020.064396118-119
GGAAGAG703250.016.429089120
TCGGAAG799600.014.190633118-119
CGGAAGA823050.013.638707120
GATCGGA956000.012.3947120
ATCGGAA950550.012.210092120
AGATCGG1039500.011.3011055118-119
TAGATCG238450.010.605247120
CTAGATC59900.09.978897116-117
TTAGATC108350.09.093244118-119
AAGATCG450250.09.081177118-119
GAGATCG344850.08.799726120
CAGATCG325900.07.941085116-117
CACACGT46650.07.462453120
ACACGTC48750.07.1409936120
GCTAGAT23150.06.951573116-117
Produced by FastQC (version 0.11.5)