FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004832460

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004832460
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15429313
Sequences flagged as poor quality0
Sequence length50-126
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAAAAAA4155250.015.61307120
TCTCGGG41450.013.027386120
CATTAAA1309850.09.852765120
TCATTAA1400750.09.770211120
GCGTCGG135100.09.59263120
ATCATTA1545250.09.213789120
TTAAAAA1295250.08.986435120
GTATCAT1764400.08.950105120
ATTAAAA1346100.08.936683120
CCGTATC2044500.08.715827120
CGTATCA1865850.08.534213120
TATCATT1720600.08.5014515120
TAAAAAA1313400.08.428274120
GCCGTAT2200050.08.16777120
CGGTGGG45650.08.148735120
CGCCGTA2348050.07.693832120
TCGCCGT2555850.07.3476467120
GTCGCCG2719250.07.1157365120
TGGTCGC2952500.07.031136120
GGTCGCC2798850.07.007685120
Produced by FastQC (version 0.11.5)