FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004832486

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004832486
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14888483
Sequences flagged as poor quality0
Sequence length59-126
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGATCT269150.09.609962120
GAGTGTA402900.09.011497120
ATCTCGG252900.08.851132120
AGTGTAG378100.08.7772255120
GTGTAGA372050.08.694133120
AGATCTC269000.08.566783120
AAGAGTG497900.08.473289120
AGAGTGT440800.08.468132120
TCGGTGG217950.08.177835120
CTCGGTG230450.08.176958120
TCTCGGT222300.08.015925118-119
GTAGATC375100.07.9514832120
GATCTCG286400.07.8786836120
TAGGGAA729550.07.7159004120
TGTAGGG804800.07.57608120
GTGGTCG170750.07.4509897120
GTAGGGA758200.07.4164257120
GTGTAGG869750.07.300121120
AAAGAGT591050.07.087124120
TGTAGAT406850.07.0507026120
Produced by FastQC (version 0.11.5)