FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004832498

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004832498
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11912056
Sequences flagged as poor quality0
Sequence length50-126
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTGGTC292100.08.934165120
GTGGTCG264650.08.863416120
TGGTCGC245250.08.683915120
TAGATCT472450.08.520457120
GGTCGCC238700.08.444678120
GATCTCG445650.08.319377120
ATCTCGG428400.08.136225120
CGGTGGT341100.08.002504120
AGATCTC455400.07.8448563118-119
TCTCGGT397700.07.844116120
TCGGTGG349550.07.843378120
AGTGTAG628250.07.8302855120
CTCGGTG372750.07.789758120
GTGTAGA606600.07.4273477120
GCCGTAT244900.07.3245115120
GAGTGTA670850.07.270451120
GTAGATC590700.07.0889955120
AGAGTGT718350.07.01519120
CGTATCA180950.06.929214120
TGTAGAT619800.06.7561626120
Produced by FastQC (version 0.11.5)