FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004832519

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004832519
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12362859
Sequences flagged as poor quality0
Sequence length50-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC145150.071.58709120
GAGCACA219250.045.560734120
AGAGCAC290300.035.135902118-119
AAGAGCA446600.022.875984118-119
GAAGAGC496400.020.54225116-117
GGAAGAG626400.016.640789120
CGGAAGA746450.014.520242120
TCGGAAG739300.014.322278118-119
ATCGGAA880000.012.915251120
GATCGGA877950.012.45795118-119
AGATCGG968250.011.493279120
TAGATCG237450.010.70439118-119
TTAGATC104050.010.695211120
CTAGATC60350.010.583789118-119
CACACGT42050.09.395719120
AAGATCG411700.09.221191116-117
GAGATCG319000.08.82539114-115
CACGTCT43700.08.739595120
CCTAGAT21550.08.250176118-119
CAGATCG282050.08.125341114-115
Produced by FastQC (version 0.11.5)