FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004832520

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004832520
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11691183
Sequences flagged as poor quality0
Sequence length51-126
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAAAAAA584200.09.777537120
GCGTCGG77050.08.020818120
TGGTCGC322700.07.995095120
GGTGGTC385600.07.889056120
TCGGTGG444300.07.616525120
GGTCGCC322400.07.500049120
GTGGTCG352550.07.4543104120
CTCGGTG473600.07.411366120
CGTATCA233450.07.273554120
TAGATCT583050.07.1932554120
TCATTAA192150.07.025807120
TCTCGGT487450.07.0038714118-119
ATCTCGG527550.06.9718966120
ATCATTA226200.06.76397120
CGGTGGT430200.06.750393120
GTCGCCG343550.06.5493073120
AGATCTC571500.06.4882317120
GATCTCG572150.06.4808607120
GCCGTAT292450.06.4216523120
AGTGTAG727550.06.3336267120
Produced by FastQC (version 0.11.5)