FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004832524

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004832524
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15222117
Sequences flagged as poor quality0
Sequence length61-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAAAAAA1064700.010.541432120
GGTCGCC642050.08.875952120
CGTATCA406100.08.872292120
GTGGTCG726800.08.708498120
GGTGGTC794350.08.34593120
GCCGTAT501300.08.301434120
CGCCGTA540850.08.2495365120
CCGTATC479150.08.246544120
GCGTCGG91450.08.208123120
TCGGTGG919450.08.111684120
TGGTCGC662300.08.094271118-119
CGGTGGT875100.08.076744120
TCGCCGT610800.07.9831557120
GTATCAT440700.07.807808120
GTCGCCG644600.07.77882120
TCATTAA369550.07.6535907120
CTCGGTG982100.07.6309123120
TCTCGGT1021400.07.2927074118-119
ATCTCGG1099550.07.2854843120
TAGATCT1275750.07.1735964120
Produced by FastQC (version 0.11.5)