FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004832528

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004832528
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14030372
Sequences flagged as poor quality0
Sequence length51-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGATCT355250.09.627941120
AGTGTAG502450.09.542157120
AGATCTC353250.09.393676120
GAGTGTA540800.08.932065120
GTGTAGA487400.08.839579120
TGGTCGC184500.08.8138485120
AGAGTGT596350.08.613213120
TCTCGGT293750.08.5591135120
GATCTCG358850.08.461165120
GGTGGTC221150.08.411383120
TGTAGAT517900.08.353759120
GTAGATC485450.08.331208120
AAGAGTG666150.08.278204120
CTCGGTG286100.08.179738120
GCGTCGG83450.08.0534935120
TCGGTGG268500.07.9113684120
GTAGGGA1002700.07.600205120
GTGGTCG202550.07.584035120
ATCTCGG323550.07.538966118-119
GGGAAAG922100.07.5031543120
Produced by FastQC (version 0.11.5)