FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004832538

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004832538
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12192723
Sequences flagged as poor quality0
Sequence length51-126
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGATCT63200.024.4936284
TCCGATC71600.021.4524773
CGATCTA18050.017.6176975
CTTCCGA94200.016.878951
AAAAAAA2955700.014.930447120
TTCCGAT140250.011.5935622
GGGACCG11454.7439244E-99.4322981
GTATCAT1119250.09.26869120
CCGTATC1249000.09.093658120
TCATTAA914750.09.0254120
CGCCGTA1428600.08.987804120
CGTATCA1148500.08.891582120
ATCATTA1013050.08.730057120
TATCATT1163400.08.607514120
CATTAAA876750.08.602209120
GCCGTAT1337250.08.596732120
CGATCTC57450.08.4595155
GCGTCGG44800.08.437486120
TCGCCGT1551350.08.253442120
GTCGCCG1650600.08.22245120
Produced by FastQC (version 0.11.5)