FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004832548

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004832548
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14353997
Sequences flagged as poor quality0
Sequence length50-126
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTGGTCG289350.08.895316120
TAGATCT507850.08.411474120
CTCGGTG410350.08.392378120
GTGTAGA673250.08.341172120
TCGGTGG374750.08.341106120
AGATCTC497250.08.325339120
GGTGGTC312500.08.313148120
GTAGATC667750.08.293072120
ATCTCGG460850.08.2148075120
AGTGTAG690500.08.176238120
GAGTGTA740750.08.042762120
TCTCGGT418950.07.976651120
GATCTCG508250.07.909063120
CGGTGGT372600.07.841763120
TGGTCGC267800.07.7964387120
TGTAGAT689600.07.7779984120
AGAGTGT798750.07.5864415120
AAGAGTG877100.07.394421120
CGTATCA183300.07.2663803120
GGTCGCC278100.07.162501120
Produced by FastQC (version 0.11.5)