FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004832560

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004832560
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11623841
Sequences flagged as poor quality0
Sequence length59-126
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGG59450.015.344571120
AAAAAAA1347400.013.705471120
TCTCGGG18800.011.492319120
CGTATCA633000.010.893799120
CCGTATC709950.010.6936455120
TCATTAA485350.010.63424120
GTATCAT609650.010.4742775120
GTCGCCG983350.010.027495120
GCCGTAT771300.010.022026120
GGTCGCC1041800.09.873918120
CGCCGTA831000.09.771468120
TATCATT647750.09.598765120
TCGCCGT925550.09.5773115120
CATTAAA471700.09.466078120
TGGTCGC1125250.09.344329120
ATCATTA544000.09.31122120
GGTGGTC1314550.08.962026120
GTGGTCG1214150.08.882572120
TCGGTGG1545250.08.622183120
CGGTGGT1439550.08.621579120
Produced by FastQC (version 0.11.5)