FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004833195

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004833195
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14726818
Sequences flagged as poor quality0
Sequence length50-126
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC215100.0104.63554120
GAGCACA361600.062.2658120
AGAGCAC491150.045.897305118-119
AAGAGCA735000.030.286755120
GAAGAGC820500.027.512947116-117
GGAAGAG985200.022.551567116-117
CGGAAGA1136650.019.91643114-115
TCGGAAG1197350.018.543959114-115
ATCGGAA1376600.016.497944112-113
GATCGGA1437400.015.523559112-113
AGATCGG1576850.014.438893110-111
CACACGT51250.013.939138120
CACGTCT59200.013.454284120
TAGATCG412150.012.876536114-115
GAGATCG518550.011.703789110-111
AAGATCG537700.011.546082110-111
ACACGTC62850.011.49709120
CTAGATC112450.011.224146110-111
CAGATCG463950.010.970147110-111
TTAGATC161700.010.898837116-117
Produced by FastQC (version 0.11.5)