FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004833204

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004833204
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14027338
Sequences flagged as poor quality0
Sequence length50-126
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGG55250.09.556297120
TAGATCT383850.08.534348120
TCGGTGG297950.08.356875120
AGTGTAG517900.08.317977120
ATCTCGG349300.08.279186120
GTGGTCG219000.08.21895120
GTGTAGA512300.07.9755745120
GAGTGTA560800.07.9384394120
CTCGGTG305400.07.936912120
AGAGTGT603750.07.9202776120
GGTGGTC244600.07.849333120
AGATCTC375150.07.7886686120
TCTCGGT333700.07.749261120
GATCTCG362850.07.7054505120
GTAGATC506900.07.4450493120
TGGTCGC201700.07.347342120
GGTCGCC203700.07.334112120
GTCGCCG205750.07.115235120
CGGTGGT295000.07.016755120
AAGAGTG684100.06.8056397118-119
Produced by FastQC (version 0.11.5)