FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004833215

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004833215
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13130097
Sequences flagged as poor quality0
Sequence length50-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC172600.089.69477120
GAGCACA286350.054.618305120
AGAGCAC386850.039.976875118-119
AAGAGCA580200.026.884424118-119
GAAGAGC672400.024.032007120
GGAAGAG798750.019.916306118-119
CGGAAGA943100.016.843512120
TCGGAAG975950.016.263136116-117
ATCGGAA1138700.013.964018116-117
GATCGGA1184100.013.482951114-115
AGATCGG1307650.012.202976120
TAGATCG332900.011.761477120
CACGTCT42000.010.816011120
CTAGATC89550.010.53888112-113
TTAGATC116000.09.844387116-117
CACACGT36200.09.760305120
GAGATCG503500.09.679592112-113
CAGATCG486550.09.217234112-113
AAGATCG385600.08.95926118-119
GCTAGAT34750.08.603636112-113
Produced by FastQC (version 0.11.5)