FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004833294

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004833294
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11773810
Sequences flagged as poor quality0
Sequence length55-126
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAAAAAA1153350.013.623814120
CGTATCA535400.010.746437120
TCATTAA403650.010.240911120
GCCGTAT678050.09.857069120
CGCCGTA752800.09.770913120
GTATCAT520050.09.679237120
ATCATTA461350.09.571315120
CATTAAA401050.09.469554120
CCGTATC621150.09.224253120
TATCATT541650.09.082793120
TGGTCGC949100.08.9257965120
GGTCGCC907450.08.733824120
GTCGCCG903500.08.612637120
TCGCCGT843550.08.374959118-119
GTGGTCG1027150.08.124891120
GCGTCGG101100.08.070716120
GGTGGTC1108950.07.898874120
TCGGTGG1272050.07.725632120
CGGTGGT1198500.07.3737597120
CTCGGTG1361700.07.102445120
Produced by FastQC (version 0.11.5)