FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004833558

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004833558
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14340763
Sequences flagged as poor quality0
Sequence length54-126
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAAAAAA682600.013.073518120
CTAGGGT4209.7270135E-411.4279621
CTAGGGC6202.2915035E-49.6769041
CATTAAA257750.09.476402120
GTATCAT349000.09.406102120
CTTGGGG58500.09.3328371
CGTATCA361450.09.2647505120
ATCATTA294600.09.024408120
TATCATT353700.08.721192120
TGGTCGC623900.08.676395120
CCGTATC445550.08.6743555120
TCATTAA255250.08.652266120
GTGGTCG676150.08.494086120
CTTGGGC72950.08.4711051
GGTCGCC619200.08.432107120
GGTGGTC738100.08.382841120
GCCGTAT475200.08.335186120
GCGTCGG141150.08.07831120
CGCCGTA530600.08.041742120
CTCGGTG914550.07.940095120
Produced by FastQC (version 0.11.5)