FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004833562

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004833562
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15308946
Sequences flagged as poor quality0
Sequence length50-126
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCGATC96750.015.9375413
CCGATCT92200.015.6828614
AAAAAAA2651050.015.224253120
CTTCCGA123200.013.0028851
CGATCTA26150.011.2424445
TCATTAA940350.010.659775120
CATTAAA882550.010.267764120
ATCATTA1056100.010.180391120
GCGTCGG110700.09.994756120
GTATCAT1171650.09.925687120
CGTATCA1230550.09.79754120
CCGTATC1362400.09.590849120
TCTCGGG36200.09.302109120
CGCCGTA1593200.09.0733185120
TATCATT1194750.09.019094120
TTCCGAT179000.09.0165092
GCCGTAT1473600.08.977285120
GGTCGCC1951850.08.663051120
TCGCCGT1763200.08.464517120
CCCCCCG6550.0040409058.2440461
Produced by FastQC (version 0.11.5)