FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004833569

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004833569
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12871322
Sequences flagged as poor quality0
Sequence length50-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC142350.084.75946120
GAGCACA232800.050.58586120
AGAGCAC321300.037.17002118-119
AAGAGCA492600.024.19421118-119
GAAGAGC556650.022.06793120
GGAAGAG677050.018.549782120
CGGAAGA777800.016.03843118-119
TCGGAAG786750.015.533573118-119
ATCGGAA923800.013.515111116-117
GATCGGA945100.012.945857116-117
AGATCGG1033950.012.072215114-115
TAGATCG248500.011.549513120
CTAGATC65750.010.1803255116-117
AAGATCG383300.09.276192112-113
TTAGATC102650.09.232275114-115
GAGATCG381850.09.200855110-111
CGATCTA19400.09.0325385
CAGATCG347300.08.287454116-117
TGAGATC161500.07.789562112-113
CACACGT30650.07.5924006120
Produced by FastQC (version 0.11.5)