FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004833578

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004833578
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9660532
Sequences flagged as poor quality0
Sequence length54-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTGGTCG250500.010.754138120
GGTGGTC286250.010.668646120
TGGTCGC222800.010.610065120
TCGGTGG349600.010.24566120
GGTCGCC215250.09.839399120
CTCGGTG393650.09.785022120
ATCTCGG455750.09.715534120
TAGATCT533100.09.61139120
CGGTGGT331700.09.586661120
GATCTCG482650.09.310789120
TCTCGGT421200.09.187733120
AGATCTC506850.09.162174120
GTAGATC655050.08.353288120
GTGTAGA693150.08.292305120
AGTGTAG723400.08.252424120
GTCGCCG237350.08.240724120
CGCCGTA213150.08.219295120
TGTAGAT696100.08.205448120
CGTATCA151250.08.0526285120
GAGTGTA780450.07.9874372120
Produced by FastQC (version 0.11.5)