FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004833590

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004833590
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11173549
Sequences flagged as poor quality0
Sequence length53-126
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGG76150.08.35124120
GGTCGCC230050.08.267078120
GGTGGTC274100.08.229886120
GTGGTCG245800.08.225514120
GATCTCG411550.08.178155120
TAGATCT425550.08.148774120
GTGTAGA552850.08.030441120
TCTCGGT348000.08.016573120
TGGTCGC219250.07.9354844120
ATCTCGG379300.07.924464120
AGAGTGT646750.07.8107133120
CTCGGTG334250.07.7719774120
TGTAGAT566900.07.693837120
CGGTGGT313800.07.6666646120
AGTGTAG563750.07.6357265118-119
GTAGATC536100.07.6210766120
AGATCTC414750.07.5870714118-119
TCGGTGG316850.07.5739307120
GAGTGTA600450.07.2739377120
CGCCGTA207050.07.244023120
Produced by FastQC (version 0.11.5)