FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004833604

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004833604
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15238579
Sequences flagged as poor quality0
Sequence length60-126
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAAAAAA1197050.013.326008120
GCGTCGG82550.011.559457120
CGCCGTA787050.011.26252120
CGTATCA593750.011.078075120
GGTCGCC999650.010.776403120
GCCGTAT735450.010.649145120
CCGTATC662600.010.615332120
TGGTCGC1087400.010.591148120
GTATCAT591500.010.460713120
GTCGCCG949150.010.407643120
GTGGTCG1190900.010.0536785120
TCGCCGT912300.09.920215120
GGTGGTC1292600.09.8616085120
CCCCCCT5508.246141E-49.81784251
TCATTAA489850.09.470518120
CGGTGGT1423700.09.391913120
TCGGTGG1545050.09.337902120
ATCATTA547850.09.3333025120
CTCGGTG1679900.08.709789120
TCTCGGG25700.08.640244120
Produced by FastQC (version 0.11.5)