FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004833605

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004833605
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15238579
Sequences flagged as poor quality0
Sequence length50-126
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC248300.0119.66047120
GAGCACA422700.070.496574120
AGAGCAC588800.051.483402120
AAGAGCA904150.033.442513118-119
GAAGAGC996400.030.062479118-119
GGAAGAG1186550.025.446566116-117
CGGAAGA1407650.021.415667116-117
TCGGAAG1496150.020.137096114-115
ATCGGAA1748750.017.300522114-115
GATCGGA1791100.016.881876112-113
AGATCGG1936350.015.568344112-113
CACGTCT46550.015.549401120
CACACGT46550.015.174717120
ACACGTC51150.014.832996120
TAGATCG467950.014.438223110-111
GAGATCG577100.013.147316110-111
CAGATCG752000.013.132569110-111
TTAGATC167500.012.72691110-111
CTAGATC119850.012.596421112-113
GCACACG68850.012.413019120
Produced by FastQC (version 0.11.5)