FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004833609

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004833609
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13481464
Sequences flagged as poor quality0
Sequence length50-126
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC198800.0137.26913120
GAGCACA342400.077.82219120
AGAGCAC477300.056.47116118-119
AAGAGCA706250.038.068184118-119
GAAGAGC805150.033.434593116-117
GGAAGAG973500.027.507908116-117
CGGAAGA1143500.023.701311114-115
TCGGAAG1187050.022.532911114-115
ATCGGAA1366800.019.808819112-113
GATCGGA1413400.018.932178112-113
CCGATCT78200.018.5320554
TCCGATC80800.018.3123
AGATCGG1527200.017.711369110-111
TAGATCG412650.016.552185110-111
CTAGATC86050.015.87651108-109
CACGTCT46150.015.616408120
CACACGT41300.015.412788118-119
CGATCTA22900.014.8253035
TTAGATC130050.014.728102110-111
ACACGTC45700.014.278408120
Produced by FastQC (version 0.11.5)