FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004833616

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004833616
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13792449
Sequences flagged as poor quality0
Sequence length50-126
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTGGTCG231450.08.942849120
TAGATCT423750.08.891273120
TCGGTGG311250.08.751057120
ATCTCGG367850.08.595158120
TGGTCGC210650.08.401842120
AGATCTC425150.08.170533120
GAGTGTA593950.08.111098120
TCTCGGT330750.08.035592120
GTAGATC541950.07.9816017120
AGTGTAG555150.07.953924120
GTGTAGA549350.07.9068484120
GGTCGCC223100.07.90609120
GATCTCG418600.07.839748120
CGGTGGT312050.07.728867120
CTCGGTG331850.07.7016144120
AGAGTGT647100.07.6581283120
GGTGGTC264950.07.585686120
GCCGTAT204050.07.144694120
AAGAGTG706050.07.103703120
TGTAGAT590650.06.896894120
Produced by FastQC (version 0.11.5)