FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004833628

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004833628
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13003474
Sequences flagged as poor quality0
Sequence length50-126
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAAAAAA997850.012.30071120
CGTATCA401400.08.56381120
ATCATTA384150.08.495478120
GGTGGTC741050.08.257383120
CCGTATC484650.08.231581120
TCATTAA320800.08.209561120
GTATCAT411550.08.1047945120
GCGTCGG116250.07.8956566120
TGGTCGC641450.07.8747916120
GTGGTCG694150.07.855979120
GGTCGCC636050.07.790738120
CATTAAA325650.07.571476120
GCCGTAT504050.07.569607120
CGCCGTA544550.07.3371305120
TATCATT453050.07.309417120
CGGTGGT809950.07.140171120
TCGGTGG849650.07.1030965120
TCGCCGT624300.07.014865120
CTCGGTG903250.06.980468120
TCTCGGT947300.06.9345193120
Produced by FastQC (version 0.11.5)