FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004833632

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004833632
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11870008
Sequences flagged as poor quality0
Sequence length58-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGG45250.013.25811120
AAAAAAA631850.09.941065120
GTGGTCG397150.08.972885120
CGCCGTA282150.08.653954120
GGTCGCC353150.08.476988120
TGGTCGC365250.08.311138120
GGTGGTC435900.08.299093120
GCCGTAT281300.08.189581120
GTCGCCG331000.08.174266120
CTCGGTG547150.08.048036120
GATCTCG644250.07.9152513120
TCGGTGG512000.07.8975086120
AGATCTC672400.07.8069353120
TCTCGGT588500.07.7476025120
CGTATCA244300.07.7109237120
TAGATCT710050.07.6717973120
ATCTCGG618050.07.629554120
CGGTGGT490200.07.5144167120
CCGTATC274850.07.5086684120
AGTGTAG924000.07.421206120
Produced by FastQC (version 0.11.5)