FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004833635

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004833635
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11888937
Sequences flagged as poor quality0
Sequence length50-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC125300.072.72893120
GAGCACA199200.049.2332120
AGAGCAC264300.035.944572120
AAGAGCA406750.024.17691120
GAAGAGC483300.021.259224120
GGAAGAG592600.017.165592118-119
CGGAAGA714750.014.608586120
TCGGAAG707850.014.46804120
ATCGGAA813750.012.738275118-119
GATCGGA812650.012.501063116-117
AGATCGG900000.011.668414120
TAGATCG235750.011.242538120
CTAGATC58200.011.231912116-117
TTAGATC88950.09.411272118-119
GAGATCG348750.09.238117116-117
CCTAGAT19950.08.862919110-111
AAGATCG290300.08.834865118-119
CAGATCG319100.08.347794120
TCTAGAT31100.08.157345120
GCTAGAT19750.08.109927108-109
Produced by FastQC (version 0.11.5)