FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004833637

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004833637
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13833685
Sequences flagged as poor quality0
Sequence length50-126
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC214700.0105.79929120
GAGCACA360300.062.503056120
AGAGCAC482250.047.094948118-119
AAGAGCA707950.031.414158118-119
GAAGAGC809300.028.12504116-117
GGAAGAG991200.022.557348116-117
CGGAAGA1164300.019.634098114-115
TCGGAAG1214850.018.341589114-115
ATCGGAA1402850.016.378952112-113
GATCGGA1446100.015.481172112-113
AGATCGG1568950.014.59737110-111
CGATCTA18800.013.7510085
TAGATCG375350.013.438804110-111
CCGATCT76900.013.1668724
TCCGATC82400.013.0069953
CACGTCT52000.012.673048120
CTAGATC76400.012.5667112-113
GAGATCG575450.012.230815114-115
AAGATCG452350.011.33108110-111
TTAGATC119950.011.260054116-117
Produced by FastQC (version 0.11.5)