FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004833640

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004833640
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16986851
Sequences flagged as poor quality0
Sequence length51-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGATCT291650.09.342657120
GAGTGTA435300.08.382845120
GTAGATC403650.08.326445120
AGTGTAG401050.08.126019120
AGATCTC306150.07.9395747120
GTGTAGA425500.07.800134120
GATCTCG309450.07.7773275120
GCGTCGG71450.07.7279105120
ATCTCGG299900.07.624739120
AGAGTGT476750.07.61625120
GTGGTCG180150.07.5625477120
GTAGGGA742250.07.414735120
CTCGGTG269600.07.413117120
TCGGTGG257450.07.203476120
TCTCGGT274200.07.1221814118-119
TAGGGAA711200.07.0970974120
AAGAGTG543000.07.084916120
TGTAGGG790700.07.066664120
GTGTAGG855850.07.0266223120
GTCGTGT1009600.06.8898635120
Produced by FastQC (version 0.11.5)