FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004833642

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004833642
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14148379
Sequences flagged as poor quality0
Sequence length50-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGG83750.011.318814120
TGGTCGC296000.09.708954120
TCGGTGG443750.09.437256120
GTGGTCG330000.09.308606120
TAGATCT639100.09.246898120
CTCGGTG473400.09.226389120
GGTGGTC361000.09.207276120
AGATCTC604250.08.757508120
ATCTCGG552100.08.726226120
TCTCGGT503600.08.685013120
GATCTCG591350.08.654322120
CGGTGGT422800.08.343936120
GTGTAGA836400.08.184653120
GAGTGTA935650.08.137234120
AGTGTAG869100.08.0769005120
TGTAGAT850550.07.999113120
AGAGTGT1007600.07.9848957120
GGTCGCC295550.07.93733120
GTAGATC819550.07.928328120
AAGAGTG1103300.07.4934916120
Produced by FastQC (version 0.11.5)