FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004833646

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004833646
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15233210
Sequences flagged as poor quality0
Sequence length51-126
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCGGG30950.016.675661120
AAAAAAA3180550.016.129004120
GCGTCGG85100.013.822028120
TCATTAA1110200.011.022021120
ATCATTA1243950.010.531642120
CATTAAA1047300.010.3488455120
CGTATCA1538950.010.185771120
GTATCAT1442200.09.924488120
CCGTATC1693000.09.850922120
CGCCGTA1957350.09.6886635120
TATCATT1415350.09.603944120
GCCGTAT1818900.09.46601120
GTAGGGG24200.09.423528120
TTAAAAA1061400.09.171007120
ATTAAAA1111400.09.001409120
GTCGCCG2299600.08.972198120
TCGCCGT2146000.08.951611120
GGTCGCC2453150.08.926784120
TGGTCGC2639500.08.708079120
GGTTAGC14503.9108272E-108.6896811
Produced by FastQC (version 0.11.5)