FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004833658

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004833658
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11308410
Sequences flagged as poor quality0
Sequence length51-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAAAAAA1187350.011.651709120
GCGTCGG74450.09.267064120
CGTATCA419350.08.655413120
TGGTCGC653650.08.306392120
CGCCGTA530800.08.216987120
GGTGGTC763950.08.04163120
TCGGTGG882950.08.0245905120
GTGGTCG706200.07.9941263120
GGTCGCC624900.07.891696120
GTATCAT425750.07.7080007120
TCATTAA356900.07.682078120
CGGTGGT836950.07.655628120
CCGTATC479200.07.5994287120
GCCGTAT503750.07.4910836120
CATTAAA357400.07.4698954120
GTCGCCG626150.07.3585443120
TCTCGGT981200.07.29444120
CTCGGTG934200.07.2605977118-119
ATCATTA402800.07.1790442120
ATCTCGG1049500.07.0712523120
Produced by FastQC (version 0.11.5)