FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004833674

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004833674
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12899362
Sequences flagged as poor quality0
Sequence length58-126
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGG36150.015.267845120
TAGATCT307200.010.936164120
GATCTCG269650.010.523469120
GAGTGTA491300.09.903126120
AGTGTAG448400.09.699975120
AGATCTC299900.09.482004120
GTGGTCG143050.09.394169120
TCGGTGG220400.09.336428120
ATCTCGG257850.09.329867120
CTCGGTG213500.09.244773120
GTGTAGA433400.09.19131120
GTAGATC429900.09.056815120
AGAGTGT539850.09.03474120
GTCGCCG124900.08.934057120
GGTGGTC177450.08.89156120
TCTCGGT234800.08.763836120
GGTCGCC128200.08.704085120
AAGAGTG611100.08.472211120
TGGTCGC135700.08.200962118-119
TGTAGAT482150.08.187324120
Produced by FastQC (version 0.11.5)