FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004833680

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004833680
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14357024
Sequences flagged as poor quality0
Sequence length51-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAAAAAA781200.08.916977120
CGCCGTA338200.08.018857120
GCGTCGG79450.08.004968120
GTGGTCG427000.07.798529120
GGTCGCC390000.07.769166120
CGTATCA297500.07.7041373120
TGGTCGC397700.07.5583987120
GGTGGTC466100.07.5047646120
CTCGGTG571400.07.129797120
GCCGTAT345050.07.129342120
ATCTCGG629150.07.0666184120
TCGGTGG549350.07.000942120
CGGTGGT528150.06.9638724120
TCTCGGT590750.06.7439127120
GTCGCCG400250.06.670775120
TCGCCGT387600.06.6178455118-119
GATCTCG669250.06.4058695118-119
AGTGTAG881650.06.35621120
TAGATCT701400.06.278818120
AGATCTC686850.06.184942118-119
Produced by FastQC (version 0.11.5)