FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004833698

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004833698
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12325744
Sequences flagged as poor quality0
Sequence length56-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATCA240400.09.558227120
GGTCGCC393100.09.40136120
GTGGTCG438500.09.235219120
TGGTCGC398500.08.8448925118-119
AAAAAAA683350.08.463439120
GGTGGTC483450.08.364141120
GCCGTAT321450.08.286718120
GTCGCCG419550.08.250972120
CGCCGTA353400.08.199617120
GTATCAT277050.08.163873120
TCGGTGG563400.08.135599120
ATCTCGG692000.07.9675064120
CGGTGGT544600.07.964778120
TCTCGGT638900.07.8503027120
CTCGGTG615300.07.68338120
CCGTATC303400.07.5537186118-119
TAGATCT788050.07.4607987120
GATCTCG753150.07.312641120
TCATTAA243600.07.2407413120
AGATCTC765200.07.1465216118-119
Produced by FastQC (version 0.11.5)