FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004833704

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004833704
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13300590
Sequences flagged as poor quality0
Sequence length52-126
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGATCT493450.08.694781120
TCGGTGG371800.08.489305120
GTGGTCG291000.08.454474120
CTCGGTG397800.08.251224120
AGTGTAG658900.08.232745120
AGATCTC476700.08.20726120
TGGTCGC258250.08.202196120
TCTCGGT413600.08.037575120
GAGTGTA712200.07.8946595120
GATCTCG493400.07.856501120
GTAGATC644750.07.8550124120
GTGTAGA640250.07.807126120
ATCTCGG453500.07.6612043120
GGTGGTC308500.07.6053176120
AGAGTGT763200.07.532219120
AAGAGTG836650.07.3443255120
TGTAGAT658400.07.3276043120
CGGTGGT357600.07.1483836120
GCGTCGG109700.06.837528120
GGTCGCC274950.06.634639118-119
Produced by FastQC (version 0.11.5)