FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004833708

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004833708
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11409215
Sequences flagged as poor quality0
Sequence length51-126
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGTGTA224250.010.060641120
TAGATCT151950.09.437728120
AGTGTAG206850.09.108449120
TGTAGGG469150.08.722539120
GTAGGGA432550.08.669898120
TAGGGAA413000.08.658975120
CGTGTAG546100.08.570235120
GTGTAGA209950.08.516686120
TCGTGTA590150.08.469405120
AAGAGTG284900.08.424377120
AGAGTGT249150.08.404943120
GTGTAGG514300.08.388469120
GTCGTGT626250.08.067419120
GTAGATC242050.08.05654120
AGATCTC168850.07.74686120
AAAGAGT349150.07.681849120
CTCGGTG149650.07.5379176120
CGTCGTG696150.07.343792118-119
TCTCGGT138150.07.209871120
TGTAGAT250650.07.133766120
Produced by FastQC (version 0.11.5)