FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004833726

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004833726
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11405460
Sequences flagged as poor quality0
Sequence length50-126
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTGGTCG330850.09.610356120
GCGTCGG76400.09.5799055120
GGTCGCC297700.08.987746120
TGGTCGC301100.08.9261055120
TCGGTGG436050.08.846458120
GGTGGTC366450.08.643984120
CGTATCA204400.08.511613120
TCTCGGT490000.08.460125120
GTCGCCG318650.08.453318120
CTCGGTG460150.08.317945120
CGGTGGT420850.08.22514120
ATCTCGG529550.08.224782120
AGATCTC584550.08.220639120
AAAAAAA498800.08.190595120
GATCTCG563700.08.099120
TAGATCT603600.07.822044120
GTGTAGA774150.07.764927120
CGCCGTA270100.07.4629316120
GTAGATC752400.07.3754363120
AGTGTAG799800.07.328379120
Produced by FastQC (version 0.11.5)