FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004833744

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004833744
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11646820
Sequences flagged as poor quality0
Sequence length68-126
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTAGGGA276500.010.284588120
TAGGGAA263600.010.036838120
TGTAGGG300800.09.992257120
GAGTGTA138400.09.796616120
CGTGTAG371200.09.535594120
GTGTAGG340750.09.454577120
GTCGTGT423000.09.006105120
CGTCGTG487500.08.959019120
TCGTGTA402550.08.733362120
GTGTAGA138200.08.551886120
AGTGTAG124650.08.494858118-119
TAGATCT92600.08.487192120
AGAGCGT642800.08.325162120
AGAGTGT159850.08.256838120
AGCGTCG553950.08.187568120
GCGTCGT519550.08.152317120
GAGCGTC597350.07.9743514120
AAGAGTG187250.07.529216120
AAGAGCG697400.07.380895120
GTAGATC149600.07.3387685120
Produced by FastQC (version 0.11.5)