FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004833780

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004833780
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11672536
Sequences flagged as poor quality0
Sequence length84-126
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAAAAAA467700.012.048258120
TGGTCGC381950.09.049864120
CATTAAA171350.08.58041120
CGTATCA238800.08.4436655120
GGTGGTC462050.08.390147120
TCATTAA167750.08.227944120
GTATCAT236450.07.893091120
ATCATTA193450.07.724256120
GTGGTCG421900.07.6239724120
GGTCGCC387300.07.5613327120
CGCCGTA342350.07.397213120
CTCGGTG561100.07.39033120
ATCTCGG610750.07.349608120
TAGATCT679950.07.210595120
TCGGTGG526700.07.1650076118-119
CGGTGGT518300.07.1322336120
TATCATT238400.07.12371120
TCTCGGT567000.07.1123357120
GATCTCG671000.07.0295267120
AGATCTC670200.06.975239120
Produced by FastQC (version 0.11.5)