FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004833796

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004833796
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16259221
Sequences flagged as poor quality0
Sequence length51-126
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGATCT244050.09.811558120
GAGTGTA366250.08.913848120
AGAGTGT400400.08.3484335120
AGTGTAG332050.08.259555120
GTGTAGA341200.08.126001120
AGATCTC259550.08.069531120
TAGGGAA629050.07.6703434120
GTAGGGA658000.07.606486120
GTAGATC361450.07.5047135120
ATCTCGG262150.07.325614120
AAGAGTG453250.07.320179118-119
TGTAGAT380150.07.0566154120
GTGTAGG763500.07.04276120
TGTAGGG699900.07.029303118-119
TCGTGTA854000.06.9429336120
CGTGTAG810400.06.923984120
TCTCGGT236600.06.7723665120
GATCTCG302700.06.7011323120
AGGGAAA712200.06.6905594120
GTCGTGT902900.06.666612120
Produced by FastQC (version 0.11.5)